Hey Lab Publications
Edited by Jody Hey, Walter Fitch and Francisco Ayala (2005)
National Academies Press
Amazon.com
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Most papers have links to abstracts at NCBI. A number of papers can
be downloaded - click on the PDF or FULL TEXT link.
2007
Hey, J., and R. Nielsen. 2007. Integration within the Felsenstein equation for
improved Markov chain Monte Carlo methods in population genetics. PNAS
104:2785–2790.
Shimada, M. K., K. Panchapakesan, S. A. Tishkoff, A. Q. Nato, Jr, and J. Hey.
2007. Divergent Haplotypes and Human History as Revealed in a Worldwide Survey
of X-Linked DNA Sequence Variation. Mol Biol Evol 24:687-698.
2006
Hey J. 2006. On the failure of modern species concepts. Trends Ecol Evol
21:447-450.
Hey J. 2006. Recent advances in assessing gene flow between diverging
populations and species. Current Opinion in Genetics & Development 16:592-596.
Won YJ, Wang Y, Sivasundar A, Raincrow J, Hey J. 2006. Nuclear gene variation
and molecular dating of the cichlid species flock of Lake Malawi. Mol Biol Evol
23:828-837.
2005
Hey, J. 2005. On the Number of New World Founders: A Population Genetic
Portrait of the Peopling of the Americas. PLoS Biol 3:0965-0975.
FULL TEXT
Sivasundar, A., and J. Hey. 2005. Sampling from Natural Populations with
RNAi Reveals High Outcrossing and Population Structure in Caenorhabditis
elegans. Current Biology 15:1598-1602.
Won, Y. J., A. Sivasundar, Y. Wang, and J. Hey. 2005. On the origin of
Lake Malawi cichlid species: a population genetic analysis of divergence. Proc
Natl Acad Sci U S A 102:6581-6586.
Won, Y. J., and J. Hey. 2005. Divergence population genetics of
chimpanzees. Mol Biol Evol 22:297-307.
2004
Hey, J., and R. Nielsen. 2004. Multilocus methods for estimating
population sizes, migration rates and divergence time, with applications to the
divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167:747-760.
Hey, J.,
Y.-J. Won, A. Sivasundar, R. Nielsen and J. A. Markert. 2004 Using nuclear
haplotypes with microsatellites to study gene flow between recently separated
populations. Molecular Ecology 13: 909-919
Hey, J. 2004. What's so hot about recombination hotspots. Public Library
of Science 2:0730-0733. FULL
TEXT
2003
Hey J., Waples R.S., Arnold M.L., Butlin R.K. & Harrison R.G. 2003
Understanding and confronting species uncertainty in biology and conservation.
Trends in Ecology and Evolution, 18, 597-603.
Hey, J., and C. A. Machado. 2003. The study of structured
populations--new hope for a difficult and divided science. Nat Rev Genet
4:535-43.
Machado, C. A., and
J. Hey. 2003. The causes of phylogenetic conflict in a
classic Drosophila species group. Proceedings of the Royal Society, London,
Series B 270:1193-1202.
Sivasundar, A., and J. Hey. 2003. Population Genetics of Caenorhabditis elegans.
The paradox of low polymorphism in a widespread species. Genetics 163:147-57.
Hey, J. 2003. Speciation and inversions: Chimps and humans. Bioessays
25:825-8.
2002
Ortíz-Barrientos,
D., J. Reiland, J. Hey, and M. Noor. 2002. Recombination and divergence of
hybridizing species. Genetica 115:167-178.
Machado,
C., R. M. Kliman, J. M. Markert and J. Hey, 2002 Inferring the history of
speciation from multilocus DNA sequence data: the case of Drosophila
pseudoobscura and its close relatives. Mol. Biol. Evol. 19: 472-488.
Hey,
J.,
and R. M. Kliman, 2002 Interactions between natural selection, recombination and
gene density in the genes of Drosophila. Genetics 160: 595-608.
2001
Hey, J.
2001 The Mind of the Species Problem. Trends in Ecology
and Evolution 16: 326-329
- PDF
DOWNLOAD
Harris, E. E. and J. Hey
2001 Human populations show reduced DNA sequence variation at the Factor IX
locus. Current Biology 11: 774-778.-
PDF DOWNLOAD
2000
Kliman,
R. M., P. Andolfatto, J. A. Coyne, F.
Depaulis, M. Kreitman, A. J. Berry, J. McCarter, J. Wakeley and
J. Hey. 2000 The population
genetics of the origin and divergence of the Drosophila simulans complex
species. Genetics 156:1913-1931.
- PDF DOWNLOAD
1999
Hey,
J.
and E. E. Harris. 1999 Population bottlenecks and patterns of human
polymorphism. Molecular Biology and
Evolution 16: 1423-1426.
-
PDF DOWNLOAD
Harris, E. E. and J. Hey. 1999 Human demography in
the Pleistocene: do mitochondrial and nuclear genes tell the same story? Evolutionary
Anthropology 8: 81-86.
- PDF DOWNLOAD
Wang,
R.-L., A. Stec, J. Hey, L. Lukens and J. Doebley. 1999 The limits of
selection during maize domestication. Nature
398: 236-239. -
PDF DOWNLOAD
Harris,
E. E. and J. Hey. 1999. X chromosome evidence for ancient human
histories. Proceedings of the National
Academy of Sciences, USA 96: 3320-3324.
- PDF
DOWNLOAD
Hey,
J.
1999. The neutralist, the fly, and the selectionist. Trends in Ecology and Evolution 14: 35-38
- PDF
DOWNLOAD
1998
Hey,
J.
1998 Selfish Genes, Pleiotropy and
the Origin of Recombination. Genetics
149: 2089-2097
- PDF
DOWNLOAD
1997
Hilton,
H. and J. Hey. 1997. A
Multilocus View of Speciation in the Drosophila
virilis species group reveals complex histories and taxonomic conflicts. Genetical
Research 70: 185-194.
- PDF DOWNLOAD
Wang,
R-L., J. Wakeley and J. Hey.
1997 Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147: 1091-1106
- PDF DOWNLOAD
Wakeley,
J. and J. Hey. 1997 Estimating Ancestral Population Parameters. Genetics
145: 847-855.
- PDF DOWNLOAD
Hey,
J.
and J. Wakeley. 1997 A coalescent estimator of the population recombination
rate. Genetics 145: 833-846.-
PDF DOWNLOAD
Hey,
J.
1997 Mitochondria and nuclear genes present conflicting portraits of human
origins. Molecular Biology and Evolution
14: 166-172.
- PDF DOWNLOAD
1996
Hilton,
H. and J. Hey. 1996. DNA sequence variation at the period locus reveals the history of species and speciation events in
the Drosophila virilis group.
Genetics 144: 1015-1025.
- PDF
DOWNLOAD
Wang,
R.-L. and J. Hey. 1996. The speciation history of Drosophila pseudoobscura and close relatives: inference from DNA
sequence variation at the period
locus. Genetics 144: 1113-1126.
- PDF
DOWNLOAD
1994
Hilton,
H., R. M. Kliman and J. Hey. 1994. Using hitchhiking genes to study
adaptation and divergence during speciation within the Drosophila melanogaster species complex. Evolution 48:
1900-1913.
- PDF DOWNLOAD
Kliman,
R. M. and J. Hey. 1994. The effects of mutation and natural selection on
codon bias in the genes of Drosophila. Genetics
137: 1049-1056.
- PDF DOWNLOAD
1993
Kliman,
R. M. and J. Hey. 1993. Reduced natural selection associated with low
recombination in Drosophila melanogaster.
Molecular Biology and Evolution
10: 1239-1258.
- PDF
DOWNLOAD
Hey,
J.
and R. M. Kliman. 1993. Population genetics and phylogenetics of DNA sequence
variation at multiple loci within and among species of the Drosophila melanogaster complex. Molecular Biology and Evolution 10: 804-822.
- PDF DOWNLOAD
Kliman,
R. M. and J. Hey. 1993. DNA sequence variation at the period
locus within and among species of the Drosophila
melanogaster complex. Genetics
133: 375-387.
- PDF DOWNLOAD
1992
Hey, J.
1992. Using phylogenetic trees to study speciation and extinction. Evolution
46: 627-640.-
PDF DOWNLOAD
1991
Hey,
J.
1991. The structure of genealogies and the distribution of fixed differences
between DNA sequence samples from natural populations.
Genetics 128: 831-840.
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DOWNLOAD
Hey,
J.
1991. A multi-dimensional coalescent process applied to multi-allelic selection
models and migration models. Theoretical
Population Biology 39: 30-48.
1989
Eanes,
W. F., J. W. Ajioka, J. Hey and C. Wesley. 1989. Restriction map
variation associated with the G6PD polymorphism in natural populations of Drosophila
melanogaster. Molecular
Biology and Evolution 6: 384-398.
Hey, J.
1989. Speciation via hybrid dysgenesis: negative evidence from the Drosophila
affinis subgroup. Genetica
78: 97-104.
Hey,
J.
1989. The transposable portion of the genome of Drosophila algonquin is very different from that in D.
melanogaster. Molecular
Biology and Evolution 6: 66-79.
PDF DOWNLOAD
<= 1987
Eanes,
W. F., C. Wesley, J. Hey, D. Houle and J. W. Ajioka. 1987. The fitness
consequences of P-element insertion in Drosophila
melanogaster. Genetical Research 52: 17-26.
Hey,
J. and
D. Houle. 1987. Habitat choice in the Drosophila
affinis subgroup. Heredity 58:
463-471.
Eanes,
W. F. and J. Hey. 1986. In vivo function of rare G6PD variants collected
from natural populations of Drosophila
melanogaster. Genetics 113: 679-693.
PDF DOWNLOAD
Eanes,
W. F., J. Hey and D. Houle. 1985. Homozygous and hemizygous viability
variation on the X chromosome of Drosophila
melanogaster. Genetics 111: 831-844.
PDF DOWNLOAD
Eanes,
W. F., B. Bingham, J. Hey and D. Houle. 1985. Targeted selection
experiments and enzyme polymorphism: negative evidence for octanoate selection
at the G6PD locus in Drosophila
melanogaster. Genetics 109: 379-391.
PDF DOWNLOAD
Hey,
J.
and M. K. Gargiulo. 1985. Sex ratio changes in Leptopilina
heterotoma in response to inbreeding. Journal
of Heredity 76: 209-211.
Hey, J., W. M. Fitch, and F. J. Ayala. 2005. Systematics and the
origin of species: an introduction. Proc Natl Acad Sci U S A 102:6515-6519.
Hey, J. 2000. Anticipating scientific revolutions in
evolutionary genetics. Evolutionary
Biology 32: 97-111.
- PDF DOWNLOAD
Hey, J. H. Hilton, N. Leahy and R.-L. Wang. 1998.
Testing models of speciation and extinction with phylogenetic trees of extant
taxa. pp. 70-90 in Biodiversity Dynamics :
Turnover of Populations, Taxa, and Communities. edited by M. L. McKinney.
Columbia University Press.
Wakeley, J. and J.
Hey. 1998. Testing speciation models with DNA sequence data. pp
157-175 in
Molecular Approaches to
Ecology and Evolution. edited by R. DeSalle and B. Schierwater. Birkhäuser-Verlag,
Basel.
Hey, J. 1994. Bridging phylogenetics and population
genetics with gene tree models. pp. 435-449 in Molecular Approaches to Ecology and Evolution, edited by B.
Schierwater, B. Streit, G. Wagner and R. DeSalle. Birkhäuser-Verlag, Basel.
PDF DOWNLOAD
Hey, J. and R. M. Kliman. 1994. Genealogical portraits
of speciation in the Drosophila
melanogaster species complex. pp. 208-216 in Non-neutral
evolution: Theories and Data, edited by B. Golding. Chapman and Hall, New
York.
Hey, J. 2004. What's so hot about recombination hotspots. Public Library
of Science 2:0730-0733.
PDF DOWNLOAD
Hey, J. 2003. Speciation and inversions: Chimps and
humans. Bioessays 25:825-8.
Nielsen, R., and J. Hey.
2003. Discussion on the Paper by Wilson, Weale and Balding. Journal of the
Royal Statistical Society Series A-Statistics in Society 166:188.
Hacia, J. G. and J. Hey. 2003. Human evolution: select
your words carefully. Heredity 90: 343-344.
Kliman, R. M. and J. Hey. 2003. Hill –Robertson
interference in Drosophila melanogaster : reply to Marais, Mouchiroud and Duret.
Genetical Research 81: 89-90.
Hey, J. 2001. Let us appreciate evolving genes. A review
of “Adaptive Evolution of Genes and Genomes” by Austin L. Hughes. Evolution
55: 2369-2370.
- PDF
DOWNLOAD
Noor, M. A. F., N. A. Johnson and J. Hey. 2000 Gene flow
between Drosophila pseudoobscura and
D. persimilis [Commentary]. Evolution
54: 2174-2175 - PDF DOWNLOAD
Hey, J. 2000.
Reply from J. Hey [Correspondence in ] Trends in Ecology and Evolution
15: 471.
Hey, J. 2000.
Migration Mumbles. A review of “Migration and Colonization in Human
Microevolution” by A. G. Fix, Trends in Ecology and Evolution. 15: 256
Hey, J.
2000. Human mitochondrial DNA recombination: can it be true?
[News & Comment
in] Trends in Ecology and Evolution. 15: 181-182.-
PDF DOWNLOAD
Hey, J. and E. E. Harris. 2000. The origins of modern
humans still look recent [Correspondence in] Current Biology 10: R8-R9.
- PDF DOWNLOAD
Hey, J. 1999. Parasite populations: The puzzle of Plasmodium.
[Dispatch in] Current Biology 9:
R565-R567.- PDF
DOWNLOAD
Hey, J. 1998. Population genetics and human origins:
Haplotypes are key!. [Correspondence in] Trends
in Genetics 14: 303-304.-
PDF DOWNLOAD
Hey, J. 1989. Evolution under the scope. A review of
“Principles of Population Genetics” by D. Hartl and A.Clark.
Trends in Genetics 5: 349
Hey, J. 1985. Speciation via hybrid dysgenesis is
unlikely. [Abstract in] Genetics
110: s75.
Hey, J. and D. Houle. 1985. Rearing Drosophila athabasca. [short
article in] Drosophila Information Service
61: 192-193.
This
paper represents an early attempt (well before work began on the
book, Genes, Categories and
Species) to address the species problem. It contains a fairly full,
and I still think correct, description of the reasons why some groups of related
organisms deserve to be called species. However it does not broach
most of the issues raised in Genes, Categories and
Species and it bears a preoccupation with definitions of the word
"species".
View
online 'A Reduction of "Species" and a Resolution of the Species Problem'
Download a PDF file of 'A Reduction of "Species" and a Resolution of
the Species Problem'
In the midst of thinking about the species problem, I spent a fair bit of time wondering over
the utility of our words, and the ways that we use words to describe things
in nature that are not very distinct. One outcome of all this was
an experiment conducted over the internet. The results of this study are
in a short paper entitled "Words and Distinction"
View 'Words and Distinction'.
Download a PDF file of
'Words and Distinction'
web page last updated
March 05, 2007
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