sxl data #Kliman et al., 2000 Genetics 156: 1913-31 37 297 1 1 1 297 4 melanogaster 1 simulans 13 mauritiana 9 sechellia 14 ME GAAGACTA-GATGGTCTGTTAATGTCCACAATCGAGGTTCTCTGAGTCGAACATTTTGTTTTGTCACTAAAACTTCATTAAAC-----------------------------TTAAATGTTGGAAGTATAGAAG------AATTTGTCGACTCACAGAACCTTTGAATGTATCCCTTTGGTCAATTGTATTATGTTTTCTTTTCCCCTTATTATTTCGACACCCGGCTCATTATGTGTTTTCTTTCTTTTCTCTCATTTTTATAAACC-----TCATTTGCCATCTACAACTACTAT SI1 GAAGACTAAGGTGGTCTGTTCATGTCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT------------------TGCTTCTGTATCGAGTTAAACGTTGGAAGTATA-AA-------AATTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI2 GAAGACTAAGGTGGTCTGTTGATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTCACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCNNNNNNNNNNNNNNNNNNNNNNNN SI3 NNNNNNNNNNNTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTCACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI4 GAAGACTAAGGTGGTCTGTTGATGTCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTTACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTCTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI5 GAAGACTAAGGTGGTCTGTTCATGTCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT------------------TGCKTCTGTATCGAGTTAAACGTTGGAAGTATA-AA-------AATTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI6 GAAGACTAAGGTGGTCTGTTGATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTTACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATNCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI7 NNNNNNNNNNNNNNNNTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT------------------TGCKTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTNTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI8 GAAGACTAAGGTGGTCTGTTCATGTCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT------------------TGCTTCTGTATCGAGTTAAACGTTGGAAGTATA-AA-------AATTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI9 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAATTTCATT------------------TGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGA--TTCTATAATTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI10 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTNTGAATGTATNCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI11 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAATTTCATT------------------TGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGA--TTCTATAATTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI12 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTTACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTCTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SI13 GAAGACTAAGGTGGTCTGTTGATGTCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT------------------TGCTTCTGTATCGAGTTAAACGTTGGAAGTATA-AA-------AATTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA1 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN MA2 G-----TAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA3 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTCTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA4 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGGACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA5 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTRTCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA6 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTRTCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTNNNNNNNNNNNNNNNNNNNNNNN MA7 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGGACCTTTCAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA8 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT MA9 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTTGTCACTAAAACTTCATT----TGGAGTAACAAAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATCCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTCTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SE1 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SE2 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SE3 NNNNNNNNNNNNGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SE4 NNNNNNNNNNNNGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGTA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SE5 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SE6 NNNNNNNNNNNNNNNNNNNNCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SE7 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGTA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SE8 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SEMA5 GAAGACTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGNA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SEMA6 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGNA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SEMB5 NNNNNNTAAGGTGGTCTGTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGTA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SEMB6 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGTA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SEMF1 NNNNNNNNNNNNNNNNNNTTCATGCCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT SEPA3 NNNNNNNNNNNNNNNNNNNNNNNNNCCACAATCGAGGTTCTCTGAGTCGAACATTCTGTTTGGTTACTTAAACTTCATT----TGGAGTAACATAAGTGCTTCTGTATCGAGTTAAACGTTGGAAGTATAGAA---------TTTGTCGACTCGCAGAACCTTTGAATGTATTCCTTTGGCCAATTGTATTATG-----TTTTCCCCTTATTATTTCGACACCCGGCTCATTA--TGTTTTCTTTTTTTTCTCTCATTTTTATAAACCATCGCTCATTTGCCATC---ATCTACTAT