Hunchback data #Kliman et al., 2000 Genetics 156: 1913-31 28 291 1 1 1 291 4 melanogaster 1 simulans 10 sechellia 8 mauritiana 9 MEL AGGATATTGTTAGCCAT--TACCAAGTGTCTCCATTTTGAACACAAAATCACTCAAATCGCCTTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGACGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAATAAAAGCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGCATGAATGAATAAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SIHU1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GTGAAAAAAA----------GAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----NTGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCN SIHU2 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCTTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAGAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SIHU? AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCKTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GNGAAAAAAA----------KAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SIHU5 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCKTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GNGAAAAAAA----------GAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACANNNN SIHU6 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GTGAAAAAAA----------GAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACNNNNN SIHU7 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTGTTTTTTTGTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAGAAAAA-AA---------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SIHU8 AGGATATTGT-AGCCATATTAC--AGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGCCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAAAGTGAAAAAAA----------GAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----TTGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCN SIHU10 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGNCAGGGGGTGGGTGCCGCCNAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GTGAAAAAAA----------GAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCN SIHU11 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAAAGTGAAAAAAA----------GAG-AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAATTCGACGCAGGCGCAGAGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SIHU13 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTTAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAG----------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SEHU1 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SEHU2 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SEHU3 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAAT------------ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCC- SEHU4 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAAT------------ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SEHU5 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTNNNNNNN SEHU6 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACANNNN SEHU7 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG SEHU8 AGGATATTGT-AGCCATATTACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-GAAAA-GCGAGGAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG MAHU1 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGNCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-CA---------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG MAHU2 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAA-CA---------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAAT------------ATGCCCACTAACCCCACTCTCTCTGTTTTCTTANNNNNNNNNNNNN MAHU3 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGACAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAAAT---------AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAATGAATATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTANNNNNN MAHU4 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGGGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAA-----------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG MAHU5 NGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGACAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAAAT---------AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAATGAATATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG MAHU6 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGACAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAAAT---------AAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAATGAATATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG MAHU7 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAA----------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAATGAATATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACANNNN MAHU8 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGGGGGTGGGTGCCGCCCA-----CCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAGCACACCAAAAAAA-GAGAAAAAAAAAA----------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG MAHU9 AGGATATTGT-AGCCAT--TACCCAGTGTCTCCATTTTGTACACAAAATCACTCAAATCCCCGTCAGAGGGTGGGTGCCGCCTAGCCACCCCTGGCGTATTTTTT-GTTAGGGGTGGTGCCGCAAACACACCAAAAAAA-GAGAAAAAAAAAA----------GAAAAATAAAATGAAAAACAAGCGGAAAAAAGAGGAAAAAACTCGACGCAGGCGCAGTGAATGAATGAATGAATGAAT----ATGCCCACTAACCCCACTCTCTCTGTTTTCTTATCCATTACAGCCG