Casimir A. Kulikowski Professor Rutgers University Department of Computer Science Hill Center - Busch Campus Piscataway. NJ 08854 (732) 445-2006 FAX -0537 kulikows@cs.rutgers.edu

Intelligent systems and machine learning in molecular biology

My major areas of research are artificial intelligence. medical informatics. and bioinformatics. In AI. my concentration is on expert problem solving and knowledge representation. pattern recognition. clustering. distributed problem solving and planning. multimodal interfaces and image interpretation. In medical informatics I am working on models for guidelines. on methods of medical decision support. biomedical imaging and predictive data mining. In bioinformatics I am working on structural domain parsing from protein sequence data. scaling. dimensionality reduction. and clustering methods for genomics and proteomics. and drug design.

Selected Publications

Vashist A, Kulikowski CA, Muchnik I. (2007) Ortholog clustering on a multipartite graph.
IEEE/ACM Trans Comput Biol Bioinform. 4(1):17-27.

Hagerty CG, Pickens DS, Chang J, Kulikowski CA, Sonnenberg FA. (2006) Prediction in annotation based guideline encoding. AMIA Annu Symp Proc. 314-8.

Maojo V, Kulikowski CA. (2006) Reflections on biomedical informatics: from cybernetics to genomic medicine and nanomedicine. Stud Health Technol Inform. 124:19-24.

Sonnenberg FA, Hagerty CG, Acharya J, Pickens DS, Kulikowski CA. (2005) Vocabulary requirements for implementing clinical guidelines in an electronic medical record: a case study. AMIA Annu Symp Proc. 709-13.

Kulikowski CA. Stefanelli M. (2004) Medinfo 2004--an opportunity to shape the future of medical informatics together. Methods Inf Med. 43(2):122-3.

Maojo V. Kulikowski CA. (2003) Bioinformatics and medical informatics: collaborations on the road to genomic medicine? J Am Med Inform Assoc. 10(6):515-22.